09/25/2025

Validation and Clinical Utility of a Pan-Cancer Circulating Tumor DNA Assay as a First-approach Test

The Journal of Molecular Diagnostics MANUSCRIPT
Authors Nisha Kanwar, Michael B. Campion, Amber R. Schneider, Dragana Milosevic, Carlos Sosa, Antonina A. Wojcik, Kevin C. Halling, Kandelaria M. Rumilla, Ying-Chun Lo, Zhiyv Niu, Katherine B. Geiersbach, Margaret A. DiGuardo, Benjamin R. Kipp, Gang Zheng

Abstract
The feasibility of circulating tumor DNA (ctDNA) assays as a first-approach test in a pan-cancer setting is not well-established. Furthermore, low ctDNA levels limit assay sensitivity which challenges adaptation to clinical genomic profiling. A 33-gene next-generation sequencing (NGS) ctDNA panel was validated, and these issues were investigated using real-world clinical data. The clinical cohort included 123 patients with ctDNA testing performed as a first approach, and 48 patients for whom matched tissue was tested at the same time-point. The overall ctDNA testing failure rate is 0%. Insufficient tumor tissue was the main reason for liquid biopsy (69%). The most common cancer primary tested was lung (39.0%), followed by colon (13.8%), bile duct (8.9%), pancreas (8.1%), breast (4.1%) and prostate (4.1%). Using AMP/ASCO/CAP guidelines, Tier I variants were detected in 33.3% patients, and Tier I or II variants were detected in 65.0% patients (including 54.5% cholangiocarcinoma patients, for whom tissue biopsy is challenging due to anatomical location). Compared with matched tissue, ctDNA showed 76% sensitivity for Tier I variants. Concurrent testing increased the number of actionable variants by 14.3% versus tissue testing alone. ctDNA results preceded tissue results by an average of 21 days. In conclusion, high feasibility, actionability and sensitivity support ctDNA assays as a potential first-line genomic test, especially in specific tumor-types for advanced tumors when tissue is unavailable.

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